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Expression of T-Cell Mediated Rejection (TCMR) Associated Genes in Native and Renal Allograft Renal Biopsies with Inflamed Scars (i-IFTA).

Z. Lyu,1 L. Pang,1 G. Zeng,2 Y. Huang,2 P. Randhawa.2

1Pathology &
Nephrology, The First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, China
2Pathology, University of Pittsburgh Medical Center, Pittsburgh, PA

Meeting: 2017 American Transplant Congress

Abstract number: 265

Keywords: Alloantigens, Kidney transplantation, Rejection, T cell receptors (TcR)

Session Information

Session Name: Concurrent Session: Long Term Kidney Graft Survival I

Session Type: Concurrent Session

Date: Monday, May 1, 2017

Session Time: 2:30pm-4:00pm

 Presentation Time: 3:18pm-3:30pm

Location: E450a

The presence of i-IFTA in allograft kidney biopsies is a bad prognostic parameter. However, despite the presence of T-cell infiltrates in these lesions there is reluctance to accept i-IFTA as a criterion of chronic TCMR. Therefore, we compared expression of T-cell genes in TCMR biopsies with or without i-IFTA. Parallel analysis was performed on biopsies with no pathology, acute tubular injury (ATI) and native interstitial nephritis (ISN). 12 renal biopsies were processed using the Pure Link FFPE tissue Total RNA & Ion Ampliseq Trancriptome Human Gene Expression Kits. Differential RNA expression analysis identified upregulation of 5273 genes in TCMR biopsies with and 2894 genes in biopsies without IFTA.(Table 1)24 genes upregulated in i-IFTA have been previously reported in TCMR. 364 genes upregulated in biopsies with native ISN overlap with i-IFTA literature. 33 genes upregulated in biopsies with i-IFTA overlap with genes reported in ATI, and conversely 38 genes upregulated in biopsies ATI have been previously reported in TCMR. In conclusion, i-IFTA biopsies express that are typical of TCMR. Therefore, i-IFTA should be accepted as a criterion of chronic TCMR, provided alternate explanations of fibrosis can be clinically excluded. The presence of similar transcripts in native ISN calls for caution in using molecular testing as a stand-alone modality to diagnose TCMR.

Table 1. Changes in Gene Expression in TCMR Biopsies with or without Fibrosis Compared to Controls with no Pathology (n=6)

UPREGULATED DOWNREGULATED
Fibrosis absent Fibrosis present Fibrosis absent Fibrosis present
# Genes 2894 5273 6471 5929
<20 fold 2879 5227 5794 5885
20-50 fold 10 34 599 34
>50 fold 5 12 78 6
Top 5 genes AC013717.3 AC007742.7 ATP1B1 AFM
AC114812.5 AC013717.3 ATP5L C11orf35
HLA-B ANKRD36BP1 ATP6V1B1 C11orf85
HLA-DRB5 AP000320.7 COMMD3-BMI1 C1QL1
KRT81 CDY2A CTD-2576F9.2 C2orf40

CITATION INFORMATION: Lyu Z, Pang L, Zeng G, Huang Y, Randhawa P. Expression of T-Cell Mediated Rejection (TCMR) Associated Genes in Native and Renal Allograft Renal Biopsies with Inflamed Scars (i-IFTA). Am J Transplant. 2017;17 (suppl 3).

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To cite this abstract in AMA style:

Lyu Z, Pang L, Zeng G, Huang Y, Randhawa P. Expression of T-Cell Mediated Rejection (TCMR) Associated Genes in Native and Renal Allograft Renal Biopsies with Inflamed Scars (i-IFTA). [abstract]. Am J Transplant. 2017; 17 (suppl 3). https://atcmeetingabstracts.com/abstract/expression-of-t-cell-mediated-rejection-tcmr-associated-genes-in-native-and-renal-allograft-renal-biopsies-with-inflamed-scars-i-ifta/. Accessed May 17, 2025.

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