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Articles tagged "Genomics"

  • 2015 American Transplant Congress

    Validation of a Blood and Biopsy Gene Expression-Based Molecular Diagnostics for Subclinical Acute Rejection: Comparing DNA Microarrays Vs. Next-Generation RNA Sequencing

    S. Kurian,1 J. Friedewald,2 F. Harrison,1 T. Gelbart,1 S. Head,1 P. Ordoukhanian,1 M. Abecassis,2 D. Salomon.1

    1The Scripps Research Institute, La Jolla, CA; 2Northwestern University, Chicago, IL.

    Background: Microarray-based gene expression signatures for clinical diagnostics are well described. However, microarrays lack advantages offered by newer technologies such as Next Generation Sequencing (NGS):…
  • 2015 American Transplant Congress

    Single Nucleotide Polymorphisms (SNPs) Associated With Acute Rejection in European American Kidney Transplant Recipients: A Genome Wide Association Study (GWAS)

    A. Israni,1 C. Dorr,1 M. Miller,2 D. Schladt,1 K. Sanghavi,3 A. Muthusamy,1 R. Remmel,3 W. Guan,4 B. Wu,4 W. Oetting,3 P. Jacobson,3 A. Matas,5 For DeKAF Genomics & GEN03 Investigators.1

    1Medicine, MMRF, Hennepin County Medical Center, Minneapolis, MN; 2Psychology, University of MN, Minneapolis, MN; 3Pharmacy, University of MN, Minneapolis, MN; 4Biostatistics, University of MN, Minneapolis, MN; 5Surgery, University of MN, Minneapolis, MN.

    Purpose: Acute rejection (AR) is associated with increased risk of allograft loss. Therefore, we conducted a GWAS to determine SNPs associated with AR in a…
  • 2015 American Transplant Congress

    Differentially Expressed Genes in Immunosuppressed Kidney Transplant Recipients

    C. Dorr,1 B. Wu,2 W. Guan,2 A. Muthusamy,1 K. Sanghavi,3 P. Jacobson,3 W. Oetting,3 D. Schladt,1 R. Remmel,3 J. Maltzman,5 A. Matas,4 For DeKAF Genomics Investigators,1 A. Israni.1

    1Medicine, MMRF, HCMC, Minneapolis, MN; 2Biostatistics, University of MN, Minneapolis, MN; 3Pharmacy, University of MN, Minneapolis, MN; 4Surgery, University of MN, Minneapolis, MN; 5Medicine, University of PA, Philadelphia, PA.

    Introduction: In our effort to personalize immunosuppressive therapies we performed RNA sequencing (RNAseq) to identify differentially expressed genes (DEGs) after kidney transplant (tx) and the…
  • 2015 American Transplant Congress

    Influence of POR*28 Genotype on Tacrolimus Disposition in Heart Transplant Recipients

    T. Alford,1 R. Page,1 J. Lindenfeld,2 C. Aquilante.1

    1University of Colorado Skaggs School of Pharmacy and Pharmaceutical Sciences, Aurora, CO; 2University of Colorado School of Medicine, Aurora, CO.

    Polymorphisms in P450 oxidoreductase (POR) have been shown to modulate CYP3A activity and alter the pharmacokinetics of CYP3A substrates, such as tacrolimus (TAC). The objective…
  • 2015 American Transplant Congress

    Donor Apolipoprotein L1 Genotype Associates With Glomerular Lesions and Graft Loss in Kidney Transplants

    T. Srinivas, P. Baliga, K. Chavin, M. Gebrezhiaber, L. Egede, D. Taber.

    Medical University of South Carolina, Charleston, SC.

    Introduction/Aims: Previous studies have associated donor apolipoproteinL1 (APOL1) risk genotypes with risk of graft loss among kidney transplants. APOL1 risk genotypes have also been associated…
  • 2015 American Transplant Congress

    Identification of Genetic Variants Associated With Variation of Tacrolimus Levels in African Americans Using GWAS

    W. Oetting,1 D. Schladt,2 W. Guan,1 A. Israni,2 R. Remmel,1 C. Dorr,2 K. Sanghavi,1 R. Mannon,3 B. Herrera,4 A. Matas,1 D. Salomon,5 P. Kwok,4 P. Jacobson,1 for DeKAF Genomics.1

    1Univ. of Minnesota, Minneapolis; 2Minneapolis Medical Research Foundation, Minneapolis; 3Univ. of Alabama, Birmingham; 4Univ. of California, San Francisco; 5Scripps Research Center, La Jolla.

    African American kidney transplant recipients (AA) have a higher incidence of allograft failure when compared to Caucasians. We have previously reported that tacrolimus troughs (TT)…
  • 2015 American Transplant Congress

    DNA Methylation of the IFNγ Promoter in CD8+ T Cell Subsets Is Modulated by CMV Infection but not by Alloreactivity in Kidney Transplantation Patients

    K. Boer,1 E. de Wit,1 L. Hofland,2 M. Betjes,1 C. Baan.1

    1Internal Medicine - Nephrology and Transplantation, Erasmus University Medical Center, Rotterdam, Netherlands; 2Internal Medicine - Endocrinology, Erasmus University Medical Center, Rotterdam, Netherlands.

    Introduction DNA methylation plays a critical role in the function of cells, including cells of the immune system. Little is known about the methylation status…
  • 2015 American Transplant Congress

    Precision Diagnosis in Kidney Transplantation

    P. Kadota, D. Perkins.

    Dept of Medicine, Univ of Illinois Chicago, Chicago, IL.

    ObjectiveA major objective in clinical practice, including transplantation, is to develop more focused and “personalized” approaches for both diagnosis and treatment. There have been several…
  • 2015 American Transplant Congress

    Distinct Blood and Biopsy Meta-Signatures for Acute Rejection Post Kidney Transplant

    W. Zhang,1 Z. Yi,1 Z. Li,1 M. Menon,1 L. Li,1 C. Xi,1 I. Greene,1 C. Wei,1 L. Gallon,2 M. Samaniego,3 A. Djamali,4 S. Alexander,5 B. Schroppel,1 B. Nankivell,5 J. Chapman,5 I. Rosales,6 R. Neal Smith,6 R. Colvin,6 P. O'Connell,5 P. Heeger,1 B. Murphy.1

    1Icahn School of Medicine at Mount Sinai, New York; 2North Western University, Chicago; 3University of Michigan, Michigan; 4University of Wisconsin, Madison; 5The University of Sydney, Sydney, Austria; 6Massachusetts General Hospital, Boston.

    Acute rejection (AR) is a major cause of allograft dysfunction. Molecular signatures of AR from blood and biopsy have been identified by several independent cohort…
  • 2015 American Transplant Congress

    Development of a Targeted Genetic Renal Disease Panel With NexGen Sequencing for Unbiased Testing of Living Kidney Donors for Genetic Kidney Disease

    C. Thomas,1 Z. Stewart,3 A. Mansilla,2 S. Mason,2 A. Kwitek,2 C. Campbell,2 R. Smith,1,2 R. Smith.1,2

    1Internal Medicine, University of Iowa, Iowa City, IA; 2Institute of Human Genetics, University of Iowa, Iowa City, IA; 3Surgery, University of Iowa, Iowa City, IA.

    Recent studies indicate that living donors biologically related to their transplant recipient may be at higher risk of ESRD compared to unrelated donors, possibly secondary…
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