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Articles tagged "Gene expression"

  • 2015 American Transplant Congress

    Differentially Expressed Genes in Immunosuppressed Kidney Transplant Recipients

    C. Dorr,1 B. Wu,2 W. Guan,2 A. Muthusamy,1 K. Sanghavi,3 P. Jacobson,3 W. Oetting,3 D. Schladt,1 R. Remmel,3 J. Maltzman,5 A. Matas,4 For DeKAF Genomics Investigators,1 A. Israni.1

    1Medicine, MMRF, HCMC, Minneapolis, MN; 2Biostatistics, University of MN, Minneapolis, MN; 3Pharmacy, University of MN, Minneapolis, MN; 4Surgery, University of MN, Minneapolis, MN; 5Medicine, University of PA, Philadelphia, PA.

    Introduction: In our effort to personalize immunosuppressive therapies we performed RNA sequencing (RNAseq) to identify differentially expressed genes (DEGs) after kidney transplant (tx) and the…
  • 2015 American Transplant Congress

    A Common Gene Signature Across Multiple Studies Identifies Biomarkers and Functional Regulation in Tolerance to Renal Allograft

    D. Baron,1,2,3 G. Ramstein,4 M. Chesneau,1,2,3 Y. Echasseriau,1,2,3 A. Pallier,1,2,3 C. Paul,1,2,3 N. Degauque,1,2,3 M. Hernandez-Fuentes,5 A. Sanchez-Fueyo,6 K. Newell,7 M. Giral,1,2,3 J.-P. Soulillou,1,2,3 R. Houlgatte,8,9 S. Brouard.1,2,3

    1UMR 1064 - CRTI, INSERM, Nantes, Loire Atlantique (44), France; 2ITUN, CHU de Nantes, Nantes, Loire Atlantique (44), France; 3Faculté de Médecine, Université de Nantes, Nantes, Loire Atlantique (44), France; 4UMR 6241 - LINA, Université de Nantes, Nantes, Loire Atlantique (44), France; 5MRC Centre for Transplantation, King's College London, London, United Kingdom; 6Institute of Liver Studies, King's College Hospital, London, United Kingdom; 7Department of Surgery, Emory University, Atlanta, GA; 8U954 - LNGERE, INSERM, Nancy, France; 9DRCI, CHU de Nancy, Nancy, France.

    Patients tolerant to a kidney graft display a specific blood transcriptional pattern but reported results from five distinct studies hardly overlapped, raising the question of…
  • 2015 American Transplant Congress

    Gene Expression of Kidney Biopsies Reveals Common Mechanisms of Rejection and a Cluster of Co-Expressed Genes Predictive of Long-term Outcomes

    B. Modena,1 S. Kurian,1 J. Friedewald,2 F. Harrison,1 T. Gelbart,1 S. Head,1 M. Abecassis,2 D. Salomon.1

    1The Scripps Research Institute, La Jolla; 2Northwestern University, Chicago.

    Purpose: Acute rejection (AR) still affects 8-14% of kidney transplants and rates of 10-year graft loss remain unchanged in part due to chronic rejection (CR).…
  • 2015 American Transplant Congress

    The Forgotten Cell: Renal Fibroblasts Are Activated By Anti-MHC Class I Antibody

    J. Chen, A. Zmijewska, R. Mannon.

    Medicine and Surgery, University of Alabama at Birmingham, Birmingham, AL.

    Chronic antibody-mediated (CAMR) rejection remains a major obstacle in the long term survival of kidney transplants, and is associated in part with interstitial fibrosis (IF)…
  • 2015 American Transplant Congress

    Perturbation of Polyomavirus Nephropathy-Specific Gene Expression in Kidney Allografts

    T. Sigdel,1 O. Bestard,1,2 N. Salomonis,3 S.-C. Hsieh,1 M. Naesens,4 J. Torras,2 T. Tran,1 S. Roedder,1 M. Sarwal.1

    1Department of Transplant Surgery, UCSF, San Francisco, CA; 2Kidney Transplant Unit, Bellvitge University Hospital, Barcelona, CAT, Spain; 3Cincinnati Childrens Hospital Medical Center, Cincinnati, OH; 4Nephrology Department, University Hospitals Leuven, Leuven, Belgium.

    Polyomavirus nephropathy (PVAN) is a common cause of kidney allograft dysfunction and loss. Microscopic observations of PVAN are similar to T-cell mediated rejection (TCMR), with…
  • 2015 American Transplant Congress

    Structure/Function Insights Into Treg Biology: Hdac11 Is a Foxp3 Deacetylase Whose Targeting Promotes and Stabilizes Foxp3 Expression and Leads to Long-Term Allograft Survival

    J. Huang,1 L. Wang,1 T. Bhatti,1 A. Samanta,1 S. Dahiya,1 R. Han,1 J. Bergman,2 A. Kozikowski,2 W. Hancock.1

    1CHOP & UPenn, Philadelphia; 2Uni of Illinois at Chicago, Chicago.

    Aim: There are huge scientific, economic and practical advantages in developing pharmacologic approaches to enhance Foxp3+ Treg function in allograft recipients versus simply injecting enormous…
  • 2015 American Transplant Congress

    A Non-Invasive Urinary Common Rejection Module (uCRM) Gene Expression Score Enables Accurate Discrimination of Acute Rejection in Kidney Transplant Patients

    O. Bestard,1,2 T. Sigdel,1 Y. Ng,1 S.-C. Hsieh,1 S. Roedder,1 N. Dvorak,1 T. Tran,1 M. Sarwal.1

    1Department of Transplant Surgery, UCSF, San Francisco, CA; 2Kidney Transplant Unit, Bellvitge University Hospital, Barcelona, CAT, Spain.

    A common rejection module (CRM) consisting of 11 genes expressed on allograft biopsies was recently shown to be highly accurate to discriminate patients undergoing acute…
  • 2015 American Transplant Congress

    Increased Cytotoxic and Regulatory T Cell and B Cell Associated Gene Transcripts in Transplant Kidney Biopsies With Non-Specific IFTA and Interstitial Inflammation

    S. Akten, M. Ajaimy, P. O Broin, Y. Bao, A. Golden, E. Akalin.

    Renal Division and Kidney Transplant Center, Computational Genomics Facility, Albert Einstein College of Medicine, Bronx, NY.

    Background: Patients with non –specific interstitial fibrosis/tubular atrophy (IFTA) have lower graft survival if their biopsies have interstitial inflammation, described as “ i” in Banff…
  • 2015 American Transplant Congress

    Blood Gene Expression at 3 Months Post-Transplantation Predicts 1-Year Histological Features in Renal Transplantation

    R. Danger,1,2 K. Renaudin,1,3,4 C. Paul,1 G. Couvrat-Desvergnes,1,3 J. Lozano,5 A. Sanchez-Fueyo,2,5 V. Meas-Yedid,6 J. Olivo-Marin,6 E. Thervet,7 J. Dantal,1,3,4 A. Moreau,1,3,4 J.-P. Duong Van Huyen,8 J.-P. Soulillou,1,3,4 M. Giral,1,3,4 S. Brouard.1,3,4

    1INSERM U1064 and ITUN, Nantes, France; 2Department of Liver Sciences, Faculty of Life Sciences & Medicine, MRC Transplant Centre, King's College London, London, United Kingdom; 3Centre Hospitalier Universitaire Hôtel-Dieu, Nantes, France; 4Universite de Nantes, Nantes, France; 5Liver Unit and Bioinformatic Platform, CIBEREHD, Hospital Clinic Barcelona, Barcelona, Spain; 6Unité d'Analyse d'Image Quantitative, Institut Pasteur, Paris, France; 7Nephrology Unit, Hôpital Européen Georges Pompidou, Paris, France; 8Service d'Anatomie Pathologique, Hôpital Européen Georges Pompidou, Paris, France.

    Histological analysis of biopsy at one year is proposed as a reliable tool for assessing renal allograft status, however, a non-invasive method for early prediction…
  • 2015 American Transplant Congress

    Blood Gene Expression Profiling in a Randomized Controlled Trial of rATG Vs. IL2RA Induction Reveals the Differences in Immune Impact and Mechanisms

    K. Chavin,1 D. Taber,1 S. Kurian,2 T. Gelbart,2 N. Pilch,1 S. Nadig,1 J. McGillicuddy,1 T. Srinivas,1 C. Bratton,1 P. Baliga,1 D. Salomon.2

    1MUSC, Charleston, SC; 2Scripps Research Institute, La Jolla, CA.

    We performed global gene expression profiling using microarrays on samples from a prospective, RCT designed to study the safety & efficacy of induction with antithymocyte…
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